PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 307aa    MW: 32579.4 Da    PI: 6.8741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.11.7e-40191542128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      +pGfrF Pt+eel+ +yL+++++g++  ++++vi+ vd+y ++P++L +    ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+  
  OGLUM12G04110.1  19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 112
                      69**********************995666778**************8445544444666********************************** PP

              NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+s+      +++g+k+t+vfy+grap+g+kt+W m+ey++
  OGLUM12G04110.1 113 FVFSSsataAARVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154
                      ***9876666667***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-4316198IPR003441NAC domain
PROSITE profilePS5100544.24518200IPR003441NAC domain
PfamPF023651.1E-2220153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY  60
HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSAT  120
AAARVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAD DDDHNAAGVA VQLPPMAPPP  180
SSSACVRLRN ELSVCRVYVS TGTLRSFDRR PLDAPPVISH HQPQLQQQQR QLPSSAAAAA  240
TNGNLIALAG GYECSHDSSG GSSEDAAIDW SSLITAATDS ATAAVDFSFN DDIDFSPAAV  300
GPWAPQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-282015519143NO APICAL MERISTEM PROTEIN
1ut4_B3e-282015519143NO APICAL MERISTEM PROTEIN
1ut7_A3e-282015519143NO APICAL MERISTEM PROTEIN
1ut7_B3e-282015519143NO APICAL MERISTEM PROTEIN
3swm_A3e-282015522146NAC domain-containing protein 19
3swm_B3e-282015522146NAC domain-containing protein 19
3swm_C3e-282015522146NAC domain-containing protein 19
3swm_D3e-282015522146NAC domain-containing protein 19
3swp_A3e-282015522146NAC domain-containing protein 19
3swp_B3e-282015522146NAC domain-containing protein 19
3swp_C3e-282015522146NAC domain-containing protein 19
3swp_D3e-282015522146NAC domain-containing protein 19
4dul_A3e-282015519143NAC domain-containing protein 19
4dul_B3e-282015519143NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9546320.0AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankKP0331900.0KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619441.10.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR39e-68NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0BP770.0A0A0E0BP77_9ORYZ; Uncharacterized protein
STRINGBGIOSGA037019-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os12g05990.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-56NAC domain containing protein 90